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19–22 Jun 2023
Seminarhaus Grainau
Europe/Berlin timezone

A Bayesian approach to fit Molecular Dynamics (MD) simulations to neutron and X-ray diffraction and spectroscopy data on the example of water

22 Jun 2023, 10:00
15m
Seminar room roof

Seminar room roof

Short talk Parallel 5

Speaker

Mrs Veronika Reich (GEMS at MLZ, Helmholtz-Zentrum Hereon)

Description

Most of the established MD water models are optimized to reproduce macroscopic water properties, but are then used to study its nanoscopic structure and dynamics.
Neutron and X-ray scattering experiments investigate matter on exactly this nanoscopic level and these experiments can be used to optimize the water models on exactly the same time- and length-scale they will be evaluated on.

In our work, we connect published experimental data of neutron and X-ray experiments on liquid water (diffuse scattering and quasielastic neutron scattering) with MD simulations via a Bayesian fitting algorithm to obtain a set of parameters that can simultaneously fit the real nanoscopic structure and dynamics on an atomic level. To do so, we tie together existing best-of-class tools for MD simulation (LAMMPS) and scattering curve computation (Sassena) using a self-written Bayesian framework that samples the parameter space with a Markov Chain Monte Carlo approach.

Primary author

Mrs Veronika Reich (GEMS at MLZ, Helmholtz-Zentrum Hereon)

Co-authors

Mr Luis Carlos Pardo (Departament de Física Escola d'Enginyeria de Barcelona Est, Universitat Politècnica de Catalunya) Prof. Martin Müller (Helmholtz-Zentrum hereon GmbH) Dr Sebastian Busch (GEMS at MLZ, Helmholtz-Zentrum Hereon, Germany)

Presentation materials

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